Tools
Combining Algal and Plant Photosynthesis (CAPP) data
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| Supporting data for Atkinson et al. (2020): 'Condensation of Rubisco into a proto-pyrenoid in higher plant chloroplasts'. | |
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iDIEL Plant software and image capture system design.
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| Software source code and datasets for Dobrescu et al. (2017): 'A "Do-It-Yourself" phenotyping system: measuring growth and morphology throughout the diel cycle in rosette shaped plants.' | |
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Installation guidance is provided in a YouTube tutorial. |
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Photomeric stereo training data set with annontated leaf masks.
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| Photomeric stereo test data set. |  |
| Supporting data for Bernotas, Scorza et al. (2019): 'A photometric stereo-based 3D imaging system using computer vision and deep learning for tracking plant growth.' Supplementary files and software protocol can be download here here, which includes a video guide for setting up PS-Plant. Additional link to the GigaScience Database: http://dx.doi.org/10.5524/100594. | |
Cyanobacteria: synthetic biology tools
Find Alistair McCormick Lab Plasmids
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The CyanoGate toolkit (Kit #1000000146) Our CyanoGate plasmids are also available under McCormick Lab Plasmids here. |
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| from Vasudevan et al. (2019): 'CyanoGate: A Golden Gate modular cloning suite for engineering cyanobacteria based on the plant MoClo syntax.' | |
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from Gale et al. (2019): 'Modification of cyanobacteria by conjugation using the CyanoGate modular cloning toolkit.'
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The Edinburgh Genome Foundry's Collection of Useful Biological Apps (CUBA). The Software Suite of the Edinburgh Genome Foundry (GitHub repository).
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